Brain data
Contents
Brain data¶
This section presents results of brain MRI data. Below are quantitative T1 values computed using the MP2RAGE and the MTsat methods. These values are averaged within the gray matter and white matter masks.
Gray matter qMRI¶
Code imports¶
# Python imports
from IPython.display import clear_output
from pathlib import Path
import numpy as np
import pandas as pd
# Import custom tools
from tools.data import Data
from tools.plot import Plot
Download data¶
data_type = 'brain'
release_version = 'latest'
dataset = Data(data_type)
dataset.download(release_version)
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Load data plot it¶
dataset.load()
fig_gm = Plot(dataset, plot_name = 'new-fig-2')
fig_gm.title = 'Brain gray matter qMRI microstructure'
fig_gm.display('jupyter-book', tissue = 'GM')
White matter qMRI¶
fig_wm = Plot(dataset, plot_name = 'new-fig-4')
fig_wm.title = 'Brain white matter qMRI microstructure'
fig_wm.display('jupyter-book', tissue = 'WM')